Plotting

Introduction

Labeled data enables expressive computations. These same labels can also be used to easily create informative plots.

xarray’s plotting capabilities are centered around xarray.DataArray objects. To plot xarray.Dataset objects simply access the relevant DataArrays, ie dset['var1']. Dataset specific plotting routines are also available (see Datasets). Here we focus mostly on arrays 2d or larger. If your data fits nicely into a pandas DataFrame then you’re better off using one of the more developed tools there.

xarray plotting functionality is a thin wrapper around the popular matplotlib library. Matplotlib syntax and function names were copied as much as possible, which makes for an easy transition between the two. Matplotlib must be installed before xarray can plot.

To use xarray’s plotting capabilities with time coordinates containing cftime.datetime objects nc-time-axis v1.2.0 or later needs to be installed.

For more extensive plotting applications consider the following projects:

  • Seaborn: “provides a high-level interface for drawing attractive statistical graphics.” Integrates well with pandas.

  • HoloViews and GeoViews: “Composable, declarative data structures for building even complex visualizations easily.” Includes native support for xarray objects.

  • hvplot: hvplot makes it very easy to produce dynamic plots (backed by Holoviews or Geoviews) by adding a hvplot accessor to DataArrays.

  • Cartopy: Provides cartographic tools.

Imports

The following imports are necessary for all of the examples.

In [1]: import numpy as np

In [2]: import pandas as pd

In [3]: import matplotlib.pyplot as plt

In [4]: import xarray as xr

For these examples we’ll use the North American air temperature dataset.

In [5]: airtemps = xr.tutorial.open_dataset('air_temperature')

In [6]: airtemps
Out[6]: 
<xarray.Dataset>
Dimensions:  (lat: 25, lon: 53, time: 2920)
Coordinates:
  * lat      (lat) float32 75.0 72.5 70.0 67.5 65.0 ... 25.0 22.5 20.0 17.5 15.0
  * lon      (lon) float32 200.0 202.5 205.0 207.5 ... 322.5 325.0 327.5 330.0
  * time     (time) datetime64[ns] 2013-01-01 ... 2014-12-31T18:00:00
Data variables:
    air      (time, lat, lon) float32 ...
Attributes:
    Conventions:  COARDS
    title:        4x daily NMC reanalysis (1948)
    description:  Data is from NMC initialized reanalysis\n(4x/day).  These a...
    platform:     Model
    references:   http://www.esrl.noaa.gov/psd/data/gridded/data.ncep.reanaly...

# Convert to celsius
In [7]: air = airtemps.air - 273.15

# copy attributes to get nice figure labels and change Kelvin to Celsius
In [8]: air.attrs = airtemps.air.attrs

In [9]: air.attrs['units'] = 'deg C'

Note

Until GH1614 is solved, you might need to copy over the metadata in attrs to get informative figure labels (as was done above).

DataArrays

One Dimension

Simple Example

The simplest way to make a plot is to call the xarray.DataArray.plot() method.

In [10]: air1d = air.isel(lat=10, lon=10)

In [11]: air1d.plot()
Out[11]: [<matplotlib.lines.Line2D at 0x7fb616068c50>]
_images/plotting_1d_simple.png

xarray uses the coordinate name along with metadata attrs.long_name, attrs.standard_name, DataArray.name and attrs.units (if available) to label the axes. The names long_name, standard_name and units are copied from the CF-conventions spec. When choosing names, the order of precedence is long_name, standard_name and finally DataArray.name. The y-axis label in the above plot was constructed from the long_name and units attributes of air1d.

In [12]: air1d.attrs
Out[12]: 
{'long_name': '4xDaily Air temperature at sigma level 995',
 'units': 'deg C',
 'precision': 2,
 'GRIB_id': 11,
 'GRIB_name': 'TMP',
 'var_desc': 'Air temperature',
 'dataset': 'NMC Reanalysis',
 'level_desc': 'Surface',
 'statistic': 'Individual Obs',
 'parent_stat': 'Other',
 'actual_range': array([185.16, 322.1 ], dtype=float32)}

Additional Arguments

Additional arguments are passed directly to the matplotlib function which does the work. For example, xarray.plot.line() calls matplotlib.pyplot.plot passing in the index and the array values as x and y, respectively. So to make a line plot with blue triangles a matplotlib format string can be used:

In [13]: air1d[:200].plot.line('b-^')
Out[13]: [<matplotlib.lines.Line2D at 0x7fb616789400>]
_images/plotting_1d_additional_args.png

Note

Not all xarray plotting methods support passing positional arguments to the wrapped matplotlib functions, but they do all support keyword arguments.

Keyword arguments work the same way, and are more explicit.

In [14]: air1d[:200].plot.line(color='purple', marker='o')
Out[14]: [<matplotlib.lines.Line2D at 0x7fb616adfd68>]
_images/plotting_example_sin3.png

Adding to Existing Axis

To add the plot to an existing axis pass in the axis as a keyword argument ax. This works for all xarray plotting methods. In this example axes is an array consisting of the left and right axes created by plt.subplots.

In [15]: fig, axes = plt.subplots(ncols=2)

In [16]: axes
Out[16]: 
array([<matplotlib.axes._subplots.AxesSubplot object at 0x7fb616aff588>,
       <matplotlib.axes._subplots.AxesSubplot object at 0x7fb616bcf1d0>], dtype=object)

In [17]: air1d.plot(ax=axes[0])
Out[17]: [<matplotlib.lines.Line2D at 0x7fb616afcbe0>]

In [18]: air1d.plot.hist(ax=axes[1])
Out[18]: 
(array([  9.,  38., 255., 584., 542., 489., 368., 258., 327.,  50.]),
 array([ 0.95 ,  2.719,  4.488, ..., 15.102, 16.871, 18.64 ], dtype=float32),
 <a list of 10 Patch objects>)

In [19]: plt.tight_layout()

In [20]: plt.draw()
_images/plotting_example_existing_axes.png

On the right is a histogram created by xarray.plot.hist().

Controlling the figure size

You can pass a figsize argument to all xarray’s plotting methods to control the figure size. For convenience, xarray’s plotting methods also support the aspect and size arguments which control the size of the resulting image via the formula figsize = (aspect * size, size):

In [21]: air1d.plot(aspect=2, size=3)
Out[21]: [<matplotlib.lines.Line2D at 0x7fb616bc5b00>]

In [22]: plt.tight_layout()
_images/plotting_example_size_and_aspect.png

This feature also works with Faceting. For facet plots, size and aspect refer to a single panel (so that aspect * size gives the width of each facet in inches), while figsize refers to the entire figure (as for matplotlib’s figsize argument).

Note

If figsize or size are used, a new figure is created, so this is mutually exclusive with the ax argument.

Note

The convention used by xarray (figsize = (aspect * size, size)) is borrowed from seaborn: it is therefore not equivalent to matplotlib’s.

Multiple lines showing variation along a dimension

It is possible to make line plots of two-dimensional data by calling xarray.plot.line() with appropriate arguments. Consider the 3D variable air defined above. We can use line plots to check the variation of air temperature at three different latitudes along a longitude line:

In [23]: air.isel(lon=10, lat=[19,21,22]).plot.line(x='time')
Out[23]: 
[<matplotlib.lines.Line2D at 0x7fb61775c2b0>,
 <matplotlib.lines.Line2D at 0x7fb616cd4c18>,
 <matplotlib.lines.Line2D at 0x7fb616cd4a20>]
_images/plotting_example_multiple_lines_x_kwarg.png

It is required to explicitly specify either

  1. x: the dimension to be used for the x-axis, or

  2. hue: the dimension you want to represent by multiple lines.

Thus, we could have made the previous plot by specifying hue='lat' instead of x='time'. If required, the automatic legend can be turned off using add_legend=False. Alternatively, hue can be passed directly to xarray.plot() as air.isel(lon=10, lat=[19,21,22]).plot(hue=’lat’).

Dimension along y-axis

It is also possible to make line plots such that the data are on the x-axis and a dimension is on the y-axis. This can be done by specifying the appropriate y keyword argument.

In [24]: air.isel(time=10, lon=[10, 11]).plot(y='lat', hue='lon')
Out[24]: 
[<matplotlib.lines.Line2D at 0x7fb616dbdba8>,
 <matplotlib.lines.Line2D at 0x7fb616dbd2e8>]
_images/plotting_example_xy_kwarg.png

Step plots

As an alternative, also a step plot similar to matplotlib’s plt.step can be made using 1D data.

In [25]: air1d[:20].plot.step(where='mid')
Out[25]: [<matplotlib.lines.Line2D at 0x7fb616dde4a8>]
_images/plotting_example_step.png

The argument where defines where the steps should be placed, options are 'pre' (default), 'post', and 'mid'. This is particularly handy when plotting data grouped with xarray.Dataset.groupby_bins().

In [26]: air_grp = air.mean(['time','lon']).groupby_bins('lat',[0,23.5,66.5,90])

In [27]: air_mean = air_grp.mean()

In [28]: air_std = air_grp.std()

In [29]: air_mean.plot.step()
Out[29]: [<matplotlib.lines.Line2D at 0x7fb616c6b828>]

In [30]: (air_mean + air_std).plot.step(ls=':')
Out[30]: [<matplotlib.lines.Line2D at 0x7fb616b145f8>]

In [31]: (air_mean - air_std).plot.step(ls=':')
Out[31]: [<matplotlib.lines.Line2D at 0x7fb616b14940>]

In [32]: plt.ylim(-20,30)
Out[32]: (-20, 30)

In [33]: plt.title('Zonal mean temperature')
Out[33]: Text(0.5,1,'Zonal mean temperature')
_images/plotting_example_step_groupby.png

In this case, the actual boundaries of the bins are used and the where argument is ignored.

Other axes kwargs

The keyword arguments xincrease and yincrease let you control the axes direction.

In [34]: air.isel(time=10, lon=[10, 11]).plot.line(y='lat', hue='lon', xincrease=False, yincrease=False)
Out[34]: 
[<matplotlib.lines.Line2D at 0x7fb616e5c358>,
 <matplotlib.lines.Line2D at 0x7fb616e5c198>]
_images/plotting_example_xincrease_yincrease_kwarg.png

In addition, one can use xscale, yscale to set axes scaling; xticks, yticks to set axes ticks and xlim, ylim to set axes limits. These accept the same values as the matplotlib methods Axes.set_(x,y)scale(), Axes.set_(x,y)ticks(), Axes.set_(x,y)lim() respectively.

Two Dimensions

Simple Example

The default method xarray.DataArray.plot() calls xarray.plot.pcolormesh() by default when the data is two-dimensional.

In [35]: air2d = air.isel(time=500)

In [36]: air2d.plot()
Out[36]: <matplotlib.collections.QuadMesh at 0x7fb616e5cc50>
_images/2d_simple.png

All 2d plots in xarray allow the use of the keyword arguments yincrease and xincrease.

In [37]: air2d.plot(yincrease=False)
Out[37]: <matplotlib.collections.QuadMesh at 0x7fb615100828>
_images/2d_simple_yincrease.png

Note

We use xarray.plot.pcolormesh() as the default two-dimensional plot method because it is more flexible than xarray.plot.imshow(). However, for large arrays, imshow can be much faster than pcolormesh. If speed is important to you and you are plotting a regular mesh, consider using imshow.

Missing Values

xarray plots data with Missing values.

In [38]: bad_air2d = air2d.copy()

In [39]: bad_air2d[dict(lat=slice(0, 10), lon=slice(0, 25))] = np.nan

In [40]: bad_air2d.plot()
Out[40]: <matplotlib.collections.QuadMesh at 0x7fb6150bac18>
_images/plotting_missing_values.png

Nonuniform Coordinates

It’s not necessary for the coordinates to be evenly spaced. Both xarray.plot.pcolormesh() (default) and xarray.plot.contourf() can produce plots with nonuniform coordinates.

In [41]: b = air2d.copy()

# Apply a nonlinear transformation to one of the coords
In [42]: b.coords['lat'] = np.log(b.coords['lat'])

In [43]: b.plot()
Out[43]: <matplotlib.collections.QuadMesh at 0x7fb61512b0b8>
_images/plotting_nonuniform_coords.png

Calling Matplotlib

Since this is a thin wrapper around matplotlib, all the functionality of matplotlib is available.

In [44]: air2d.plot(cmap=plt.cm.Blues)
Out[44]: <matplotlib.collections.QuadMesh at 0x7fb614ff9b38>

In [45]: plt.title('These colors prove North America\nhas fallen in the ocean')
Out[45]: Text(0.5,1,'These colors prove North America\nhas fallen in the ocean')

In [46]: plt.ylabel('latitude')
Out[46]: Text(0,0.5,'latitude')

In [47]: plt.xlabel('longitude')
Out[47]: Text(0.5,0,'longitude')

In [48]: plt.tight_layout()

In [49]: plt.draw()
_images/plotting_2d_call_matplotlib.png

Note

xarray methods update label information and generally play around with the axes. So any kind of updates to the plot should be done after the call to the xarray’s plot. In the example below, plt.xlabel effectively does nothing, since d_ylog.plot() updates the xlabel.

In [50]: plt.xlabel('Never gonna see this.')
Out[50]: Text(0.5,0,'Never gonna see this.')

In [51]: air2d.plot()
Out[51]: <matplotlib.collections.QuadMesh at 0x7fb6161c88d0>

In [52]: plt.draw()
_images/plotting_2d_call_matplotlib2.png

Colormaps

xarray borrows logic from Seaborn to infer what kind of color map to use. For example, consider the original data in Kelvins rather than Celsius:

In [53]: airtemps.air.isel(time=0).plot()
Out[53]: <matplotlib.collections.QuadMesh at 0x7fb614fa4668>
_images/plotting_kelvin.png

The Celsius data contain 0, so a diverging color map was used. The Kelvins do not have 0, so the default color map was used.

Robust

Outliers often have an extreme effect on the output of the plot. Here we add two bad data points. This affects the color scale, washing out the plot.

In [54]: air_outliers = airtemps.air.isel(time=0).copy()

In [55]: air_outliers[0, 0] = 100

In [56]: air_outliers[-1, -1] = 400

In [57]: air_outliers.plot()
Out[57]: <matplotlib.collections.QuadMesh at 0x7fb614f5db38>
_images/plotting_robust1.png

This plot shows that we have outliers. The easy way to visualize the data without the outliers is to pass the parameter robust=True. This will use the 2nd and 98th percentiles of the data to compute the color limits.

In [58]: air_outliers.plot(robust=True)
Out[58]: <matplotlib.collections.QuadMesh at 0x7fb614ea07b8>
_images/plotting_robust2.png

Observe that the ranges of the color bar have changed. The arrows on the color bar indicate that the colors include data points outside the bounds.

Discrete Colormaps

It is often useful, when visualizing 2d data, to use a discrete colormap, rather than the default continuous colormaps that matplotlib uses. The levels keyword argument can be used to generate plots with discrete colormaps. For example, to make a plot with 8 discrete color intervals:

In [59]: air2d.plot(levels=8)
Out[59]: <matplotlib.collections.QuadMesh at 0x7fb614e46b00>
_images/plotting_discrete_levels.png

It is also possible to use a list of levels to specify the boundaries of the discrete colormap:

In [60]: air2d.plot(levels=[0, 12, 18, 30])
Out[60]: <matplotlib.collections.QuadMesh at 0x7fb616856ba8>
_images/plotting_listed_levels.png

You can also specify a list of discrete colors through the colors argument:

In [61]: flatui = ["#9b59b6", "#3498db", "#95a5a6", "#e74c3c", "#34495e", "#2ecc71"]

In [62]: air2d.plot(levels=[0, 12, 18, 30], colors=flatui)
Out[62]: <matplotlib.collections.QuadMesh at 0x7fb614eaae80>
_images/plotting_custom_colors_levels.png

Finally, if you have Seaborn installed, you can also specify a seaborn color palette to the cmap argument. Note that levels must be specified with seaborn color palettes if using imshow or pcolormesh (but not with contour or contourf, since levels are chosen automatically).

In [63]: air2d.plot(levels=10, cmap='husl')
Out[63]: <matplotlib.collections.QuadMesh at 0x7fb616699f60>

In [64]: plt.draw()
_images/plotting_seaborn_palette.png

Faceting

Faceting here refers to splitting an array along one or two dimensions and plotting each group. xarray’s basic plotting is useful for plotting two dimensional arrays. What about three or four dimensional arrays? That’s where facets become helpful.

Consider the temperature data set. There are 4 observations per day for two years which makes for 2920 values along the time dimension. One way to visualize this data is to make a separate plot for each time period.

The faceted dimension should not have too many values; faceting on the time dimension will produce 2920 plots. That’s too much to be helpful. To handle this situation try performing an operation that reduces the size of the data in some way. For example, we could compute the average air temperature for each month and reduce the size of this dimension from 2920 -> 12. A simpler way is to just take a slice on that dimension. So let’s use a slice to pick 6 times throughout the first year.

In [65]: t = air.isel(time=slice(0, 365 * 4, 250))

In [66]: t.coords
Out[66]: 
Coordinates:
  * lat      (lat) float32 75.0 72.5 70.0 67.5 65.0 ... 25.0 22.5 20.0 17.5 15.0
  * lon      (lon) float32 200.0 202.5 205.0 207.5 ... 322.5 325.0 327.5 330.0
  * time     (time) datetime64[ns] 2013-01-01 ... 2013-11-09T12:00:00

Simple Example

The easiest way to create faceted plots is to pass in row or col arguments to the xarray plotting methods/functions. This returns a xarray.plot.FacetGrid object.

In [67]: g_simple = t.plot(x='lon', y='lat', col='time', col_wrap=3)
_images/plot_facet_dataarray.png

Faceting also works for line plots.

In [68]: g_simple_line = t.isel(lat=slice(0,None,4)).plot(x='lon', hue='lat', col='time', col_wrap=3)
_images/plot_facet_dataarray_line.png

4 dimensional

For 4 dimensional arrays we can use the rows and columns of the grids. Here we create a 4 dimensional array by taking the original data and adding a fixed amount. Now we can see how the temperature maps would compare if one were much hotter.

In [69]: t2 = t.isel(time=slice(0, 2))

In [70]: t4d = xr.concat([t2, t2 + 40], pd.Index(['normal', 'hot'], name='fourth_dim'))

# This is a 4d array
In [71]: t4d.coords
Out[71]: 
Coordinates:
  * time        (time) datetime64[ns] 2013-01-01 2013-03-04T12:00:00
  * lon         (lon) float32 200.0 202.5 205.0 207.5 ... 325.0 327.5 330.0
  * lat         (lat) float32 75.0 72.5 70.0 67.5 65.0 ... 22.5 20.0 17.5 15.0
  * fourth_dim  (fourth_dim) object 'normal' 'hot'

In [72]: t4d.plot(x='lon', y='lat', col='time', row='fourth_dim')
Out[72]: <xarray.plot.facetgrid.FacetGrid at 0x7fb614af6780>
_images/plot_facet_4d.png

Other features

Faceted plotting supports other arguments common to xarray 2d plots.

In [73]: hasoutliers = t.isel(time=slice(0, 5)).copy()

In [74]: hasoutliers[0, 0, 0] = -100

In [75]: hasoutliers[-1, -1, -1] = 400

In [76]: g = hasoutliers.plot.pcolormesh('lon', 'lat', col='time', col_wrap=3,
   ....:                                 robust=True, cmap='viridis',
   ....:                                 cbar_kwargs={'label': 'this has outliers'})
   ....: 
_images/plot_facet_robust.png

FacetGrid Objects

xarray.plot.FacetGrid is used to control the behavior of the multiple plots. It borrows an API and code from Seaborn’s FacetGrid. The structure is contained within the axes and name_dicts attributes, both 2d Numpy object arrays.

In [77]: g.axes
Out[77]: 
array([[<matplotlib.axes._subplots.AxesSubplot object at 0x7fb6148f1c18>,
        <matplotlib.axes._subplots.AxesSubplot object at 0x7fb614893dd8>,
        <matplotlib.axes._subplots.AxesSubplot object at 0x7fb61483fe10>],
       [<matplotlib.axes._subplots.AxesSubplot object at 0x7fb614867e48>,
        <matplotlib.axes._subplots.AxesSubplot object at 0x7fb614812eb8>,
        <matplotlib.axes._subplots.AxesSubplot object at 0x7fb6147bdeb8>]], dtype=object)

In [78]: g.name_dicts
Out[78]: 
array([[{'time': numpy.datetime64('2013-01-01T00:00:00.000000000')},
        {'time': numpy.datetime64('2013-03-04T12:00:00.000000000')},
        {'time': numpy.datetime64('2013-05-06T00:00:00.000000000')}],
       [{'time': numpy.datetime64('2013-07-07T12:00:00.000000000')},
        {'time': numpy.datetime64('2013-09-08T00:00:00.000000000')}, None]], dtype=object)

It’s possible to select the xarray.DataArray or xarray.Dataset corresponding to the FacetGrid through the name_dicts.

In [79]: g.data.loc[g.name_dicts[0, 0]]
Out[79]: 
<xarray.DataArray 'air' (lat: 25, lon: 53)>
array([[-100.  ,  -30.65,  -29.65, ...,  -40.35,  -37.65,  -34.55],
       [ -29.35,  -28.65,  -28.45, ...,  -40.35,  -37.85,  -33.85],
       [ -23.15,  -23.35,  -24.26, ...,  -39.95,  -36.76,  -31.45],
       ...,
       [  23.45,   23.05,   23.25, ...,   22.25,   21.95,   21.55],
       [  22.75,   23.05,   23.64, ...,   22.75,   22.75,   22.05],
       [  23.14,   23.64,   23.95, ...,   23.75,   23.64,   23.45]], dtype=float32)
Coordinates:
  * lat      (lat) float32 75.0 72.5 70.0 67.5 65.0 ... 25.0 22.5 20.0 17.5 15.0
  * lon      (lon) float32 200.0 202.5 205.0 207.5 ... 322.5 325.0 327.5 330.0
    time     datetime64[ns] 2013-01-01
Attributes:
    long_name:     4xDaily Air temperature at sigma level 995
    units:         deg C
    precision:     2
    GRIB_id:       11
    GRIB_name:     TMP
    var_desc:      Air temperature
    dataset:       NMC Reanalysis
    level_desc:    Surface
    statistic:     Individual Obs
    parent_stat:   Other
    actual_range:  [185.16 322.1 ]

Here is an example of using the lower level API and then modifying the axes after they have been plotted.

In [80]: g = t.plot.imshow('lon', 'lat', col='time', col_wrap=3, robust=True)

In [81]: for i, ax in enumerate(g.axes.flat):
   ....:     ax.set_title('Air Temperature %d' % i)
   ....: 

In [82]: bottomright = g.axes[-1, -1]

In [83]: bottomright.annotate('bottom right', (240, 40))
Out[83]: Text(240,40,'bottom right')

In [84]: plt.draw()
_images/plot_facet_iterator.png

TODO: add an example of using the map method to plot dataset variables (e.g., with plt.quiver).

Datasets

xarray has limited support for plotting Dataset variables against each other. Consider this dataset

In [85]: ds = xr.tutorial.scatter_example_dataset()

In [86]: ds
Out[86]: 
<xarray.Dataset>
Dimensions:  (w: 4, x: 3, y: 11, z: 4)
Coordinates:
  * x        (x) int64 0 1 2
  * y        (y) float64 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0
  * z        (z) int64 0 1 2 3
  * w        (w) <U5 'one' 'two' 'three' 'five'
Data variables:
    A        (x, y, z, w) float64 -0.104 0.02719 -0.0425 ... -0.1175 -0.0183
    B        (x, y, z, w) float64 0.0 0.0 0.0 0.0 ... 1.369 1.408 1.387 1.417

Suppose we want to scatter A against B

In [87]: ds.plot.scatter(x='A', y='B')
Out[87]: <matplotlib.collections.PathCollection at 0x7fb61465c400>
_images/ds_simple_scatter.png

The hue kwarg lets you vary the color by variable value

In [88]: ds.plot.scatter(x='A', y='B', hue='w')
Out[88]: 
[<matplotlib.collections.PathCollection at 0x7fb6146353c8>,
 <matplotlib.collections.PathCollection at 0x7fb614774c18>,
 <matplotlib.collections.PathCollection at 0x7fb6147d8710>,
 <matplotlib.collections.PathCollection at 0x7fb61482b358>]
_images/ds_hue_scatter.png

When hue is specified, a colorbar is added for numeric hue DataArrays by default and a legend is added for non-numeric hue DataArrays (as above). You can force a legend instead of a colorbar by setting hue_style='discrete'. Additionally, the boolean kwarg add_guide can be used to prevent the display of a legend or colorbar (as appropriate).

In [89]: ds.w.values = [1, 2, 3, 5]

In [90]: ds.plot.scatter(x='A', y='B', hue='w', hue_style='discrete')
Out[90]: 
[<matplotlib.collections.PathCollection at 0x7fb614b4de48>,
 <matplotlib.collections.PathCollection at 0x7fb6160517b8>,
 <matplotlib.collections.PathCollection at 0x7fb614c6bba8>,
 <matplotlib.collections.PathCollection at 0x7fb614c025f8>]
_images/ds_discrete_legend_hue_scatter.png

The markersize kwarg lets you vary the point’s size by variable value. You can additionally pass size_norm to control how the variable’s values are mapped to point sizes.

In [91]: ds.plot.scatter(x='A', y='B', hue='z', hue_style='discrete', markersize='z')
Out[91]: 
[<matplotlib.collections.PathCollection at 0x7fb61487d128>,
 <matplotlib.collections.PathCollection at 0x7fb614808ef0>,
 <matplotlib.collections.PathCollection at 0x7fb616d1a518>,
 <matplotlib.collections.PathCollection at 0x7fb614f8bcf8>]
_images/ds_hue_size_scatter.png

Faceting is also possible

In [92]: ds.plot.scatter(x='A', y='B', col='x', row='z', hue='w', hue_style='discrete')
Out[92]: <xarray.plot.facetgrid.FacetGrid at 0x7fb617781908>
_images/ds_facet_scatter.png

For more advanced scatter plots, we recommend converting the relevant data variables to a pandas DataFrame and using the extensive plotting capabilities of seaborn.

Maps

To follow this section you’ll need to have Cartopy installed and working.

This script will plot the air temperature on a map.

In [93]: import cartopy.crs as ccrs

In [94]: air = xr.tutorial.open_dataset('air_temperature').air

In [95]: ax = plt.axes(projection=ccrs.Orthographic(-80, 35))

In [96]: air.isel(time=0).plot.contourf(ax=ax, transform=ccrs.PlateCarree());

In [97]: ax.set_global(); ax.coastlines();
_images/plotting_maps_cartopy.png

When faceting on maps, the projection can be transferred to the plot function using the subplot_kws keyword. The axes for the subplots created by faceting are accessible in the object returned by plot:

In [98]: p = air.isel(time=[0, 4]).plot(transform=ccrs.PlateCarree(), col='time',
   ....:                                subplot_kws={'projection': ccrs.Orthographic(-80, 35)})
   ....: 

In [99]: for ax in p.axes.flat:
   ....:     ax.coastlines()
   ....:     ax.gridlines()
   ....: 

In [100]: plt.draw();
_images/plotting_maps_cartopy_facetting.png

Details

Ways to Use

There are three ways to use the xarray plotting functionality:

  1. Use plot as a convenience method for a DataArray.

  2. Access a specific plotting method from the plot attribute of a DataArray.

  3. Directly from the xarray plot submodule.

These are provided for user convenience; they all call the same code.

In [101]: import xarray.plot as xplt

In [102]: da = xr.DataArray(range(5))

In [103]: fig, axes = plt.subplots(ncols=2, nrows=2)

In [104]: da.plot(ax=axes[0, 0])
Out[104]: [<matplotlib.lines.Line2D at 0x7fb614094ac8>]

In [105]: da.plot.line(ax=axes[0, 1])
Out[105]: [<matplotlib.lines.Line2D at 0x7fb61409e048>]

In [106]: xplt.plot(da, ax=axes[1, 0])
Out[106]: [<matplotlib.lines.Line2D at 0x7fb614130e48>]

In [107]: xplt.line(da, ax=axes[1, 1])
Out[107]: [<matplotlib.lines.Line2D at 0x7fb6140dc160>]

In [108]: plt.tight_layout()

In [109]: plt.draw()
_images/plotting_ways_to_use.png

Here the output is the same. Since the data is 1 dimensional the line plot was used.

The convenience method xarray.DataArray.plot() dispatches to an appropriate plotting function based on the dimensions of the DataArray and whether the coordinates are sorted and uniformly spaced. This table describes what gets plotted:

Dimensions

Plotting function

1

xarray.plot.line()

2

xarray.plot.pcolormesh()

Anything else

xarray.plot.hist()

Coordinates

If you’d like to find out what’s really going on in the coordinate system, read on.

In [110]: a0 = xr.DataArray(np.zeros((4, 3, 2)), dims=('y', 'x', 'z'),
   .....:                   name='temperature')
   .....: 

In [111]: a0[0, 0, 0] = 1

In [112]: a = a0.isel(z=0)

In [113]: a
Out[113]: 
<xarray.DataArray 'temperature' (y: 4, x: 3)>
array([[1., 0., 0.],
       [0., 0., 0.],
       [0., 0., 0.],
       [0., 0., 0.]])
Dimensions without coordinates: y, x

The plot will produce an image corresponding to the values of the array. Hence the top left pixel will be a different color than the others. Before reading on, you may want to look at the coordinates and think carefully about what the limits, labels, and orientation for each of the axes should be.

In [114]: a.plot()
Out[114]: <matplotlib.collections.QuadMesh at 0x7fb6140946a0>
_images/plotting_example_2d_simple.png

It may seem strange that the values on the y axis are decreasing with -0.5 on the top. This is because the pixels are centered over their coordinates, and the axis labels and ranges correspond to the values of the coordinates.

Multidimensional coordinates

See also: Working with Multidimensional Coordinates.

You can plot irregular grids defined by multidimensional coordinates with xarray, but you’ll have to tell the plot function to use these coordinates instead of the default ones:

In [115]: lon, lat = np.meshgrid(np.linspace(-20, 20, 5), np.linspace(0, 30, 4))

In [116]: lon += lat/10

In [117]: lat += lon/10

In [118]: da = xr.DataArray(np.arange(20).reshape(4, 5), dims=['y', 'x'],
   .....:                   coords = {'lat': (('y', 'x'), lat),
   .....:                             'lon': (('y', 'x'), lon)})
   .....: 

In [119]: da.plot.pcolormesh('lon', 'lat');
_images/plotting_example_2d_irreg.png

Note that in this case, xarray still follows the pixel centered convention. This might be undesirable in some cases, for example when your data is defined on a polar projection (GH781). This is why the default is to not follow this convention when plotting on a map:

In [120]: import cartopy.crs as ccrs

In [121]: ax = plt.subplot(projection=ccrs.PlateCarree());

In [122]: da.plot.pcolormesh('lon', 'lat', ax=ax);

In [123]: ax.scatter(lon, lat, transform=ccrs.PlateCarree());

In [124]: ax.coastlines(); ax.gridlines(draw_labels=True);
_images/plotting_example_2d_irreg_map.png

You can however decide to infer the cell boundaries and use the infer_intervals keyword:

In [125]: ax = plt.subplot(projection=ccrs.PlateCarree());

In [126]: da.plot.pcolormesh('lon', 'lat', ax=ax, infer_intervals=True);

In [127]: ax.scatter(lon, lat, transform=ccrs.PlateCarree());

In [128]: ax.coastlines(); ax.gridlines(draw_labels=True);
_images/plotting_example_2d_irreg_map_infer.png

Note

The data model of xarray does not support datasets with cell boundaries yet. If you want to use these coordinates, you’ll have to make the plots outside the xarray framework.

One can also make line plots with multidimensional coordinates. In this case, hue must be a dimension name, not a coordinate name.

In [129]: f, ax = plt.subplots(2, 1)

In [130]: da.plot.line(x='lon', hue='y', ax=ax[0]);

In [131]: da.plot.line(x='lon', hue='x', ax=ax[1]);
_images/plotting_example_2d_hue_xy.png